Common Breath Test Results Part 3: Atypical Breath Test Results

Atypical breath test patterns provide unique insights into digestive health and treatment direction. Consequently, interpret results within the clinical context. In general, despite expert and research-based guidelines for diagnostic breath testing, the interpretation of results lacks a clear, universally accepted consensus. This leaves room for broad, sometimes varied clinical interpretation, making results more functional and insightful. As hydrogen and methane breath test markers signal different underlying conditions based on timing, peak patterns, and gas fluctuations, clinicians rely on experience and understanding of individual patient patterns.

Atypical Breath Testing Patterns

Breath tests are essential for diagnosing digestive issues such as small/large intestinal bacterial overgrowth (SIBO and LIBO). However, some results fall into atypical patterns, giving unique insights. Here’s an overview of six atypical breath test result patterns.

Flat Methane

In this case of atypical breath results, methane (CH) levels are elevated, but flat, throughout the small intestine (0–120 min) (Figure 1). Elevated methane gas levels throughout test results suggest increased bacterial activity throughout the intestines or elevated colonic activity combined with reduced gut motility.

Test results showing an atypical breath test pattern: elevated flat methane
Figure 1: This is a lactulose breath test example of an atypical breath test result for a flat-line, elevated methane SIBO positive results.

Baseline Elevated Hydrogen

Initially high hydrogen (H) that either dips or remains high across the small intestine reflects potential pre-existing fermentation (Figures 2a, 2b). 

Atypical breath test results showing elevated baseline hydrogen
Figure 2a: This is an example of an elevated baseline hydrogen breath test. Elevated baseline (34 ppm) gas activity quickly cleared out with a significant reduction in activity. Possible causes of elevated hydrogen baselines include, but are not limited to, not following preparation diet guidelines, reduced gut motility, oral microbial imbalance, or significant colon gas activity.

 

Atypical breath test pattern showing baseline elevated hydrogen
Figure 2b: This is an example of an elevated baseline hydrogen breath test. An elevated baseline (34 ppm), followed by continued elevation in hydrogen gas activity does not meet diagnostic criteria for SIBO. Possible causes of continually elevated hydrogen gas activity include, but are not limited to, reduced gut motility, sugar malabsorption syndrome, and/or yeast overgrowth.

Flat Negative

Low hydrogen and methane (<3ppm) suggest low fermentative activity or microbial population (Figure 3).

atypical pattern for breath test showing flat methane and hydrogen levels in a negative SIBO result
Figure 3: This lactulose breath test result shows little to no measurable gas activity (hydrogen and methane). Common causes for a “flat-line” result include: testing too soon after antimicrobials (antibiotics, anti-fungals, herbal antimicrobials) or the presence of dominant hydrogen sulfide (H2S) SIBO.

Delayed Gut Motility

A hydrogen spike after 120 min with a second increase (double peak) shows slowed motility (Figure 4). Normally, a classic looking “double peak” of gas activity shows an initial spike in gas activity just prior to and after the intestinal transition zone (commonly around 100-120 min). The pattern becomes atypical when the double peak occurs outside of that time frame.

results showing delayed gut motility which is an atypical breath test pattern
Figure 4: These results show delayed emptying of lactulose from the small to large intestines. Reduced gut motility and delayed emptying may be identified with a transition zone occurring in the 140-160 minutes specimens.

Multiple Peaks and Valleys

Fluctuating H/CH peaks may result from uneven microbial distribution (Figure 5).  Causes include segmental delays in motility, uneven transit times with pockets of microbes at different points, and SIBO. Additionally, different bacterial species producing gas at varying rates can fluctuate gas levels. Finally, physiological gut responses with normal motility patterns or minor motility disorders may influence gas patterns in the intestines.

multiple peaks and valleys in hydrogen methane breath tests are atypical
Figure 5: Multiple peaks and valleys in gas activity may be due to a variety of conditions.

Atypical Colon

A notable hydrogen and/or methane spike in the colon indicates possible microbial imbalance in the large intestines (Figures 6a, 6b).

Atypical colon breath test result
Figure 6a: This is atypical breath test example shows a slightly elevated SIBO (combined H₂ & CH₄) result with significant colon gas activity at 140-180 minutes. Additionally, the total hydrogen activity (Total Bacterial Load) of these results strongly suggests irregular colon fermentation/ microbial activity.

 

Atypical colon total bacterial load breath test results
Figure 6b: These breath test results show the total hydrogen gas activity (Total Bacterial Load) for the results in Figure 6a. Note high colon activity at 140-180 min.

Conclusion

Each atypical breath test pattern reveals distinct physiological and microbial dynamics. By combining the results with the clinical presentation, healthcare providers can create highly targeted and personalized treatment plans for various GI concerns. In some cases, these trends can be difficult to interpret. Neurovanna offers healthcare providers using our breath tests free consults with our SIBO expert Dr. Bradley Bush. Become a Neurovanna healthcare provider for quality and exclusive test results as well as skilled clinical support.

This is part 3 of a three part series on common breath test trends. Read part 1 to learn about common trends for lactulose and glucose SIBO breath tests. Part 2 discusses common trends in fructose, sucrose, and lactose sugar malabsorption breath test results.

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